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Ushering in a new era of single-cell transcriptomics in bacteria. Homberger C, Barquist L, Vogel J. Microlife. 2022 Sep 21;3:uqac020. doi: 10.1093/femsml/uqac020. eCollection 2022.
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Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads. Homberger C, Hayward RJ, Barquist L, Vogel J. mBio. 2023 Apr 25;14(2):e0355722. doi: 10.1128/mbio.03557-22. Epub 2023 Mar 7.
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RNA recording in single bacterial cells using reprogrammed tracrRNAs. Jiao C, Reckstadt C, König F, Homberger C, Yu J, Vogel J, Westermann AJ, Sharma CM, Beisel CL. Nat Biotechnol. 2023 Aug;41(8):1107-1116. doi: 10.1038/s41587-022-01604-8. Epub 2023 Jan 5.
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A MATQ-seq-Based Protocol for Single-Cell RNA-seq in Bacteria. Homberger C, Saliba AE, Vogel J. Methods Mol Biol. 2023;2584:105-121. doi: 10.1007/978-1-0716-2756-3_4.
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The DNA polymerase of bacteriophage YerA41 replicates its T-modified DNA in a primer-independent manner. Gomez-Raya-Vilanova MV, Leskinen K, Bhattacharjee A, Virta P, Rosenqvist P, Smith JLR, Bayfield OW, Homberger C, Kerrinnes T, Vogel J, Pajunen MI, Skurnik M. Nucleic Acids Res. 2022 Apr 22;50(7):3985-3997. doi: 10.1093/nar/gkac203.
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Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria. Imdahl F, Vafadarnejad E, Homberger C, Saliba AE, Vogel J. Nat Microbiol. 2020 Aug 17. doi: 10.1038/s41564-020-0774-1. Online ahead of print.
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Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads. Prezza G, Heckel T, Dietrich S, Homberger C, Westermann AJ, Vogel J. RNA. 2020 Apr 28. pii: rna.075945.120. doi: 10.1261/rna.075945.120. [Epub ahead of print]
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