Doctoral Researcher


Name Özge Osmanoglu
Affiliation Theodor-Boveri-Institute (Biocenter)
Chair of Bioinformatics
Street Am Hubland
Zip Code 97074
City Würzburg
Email E-mail
Telephone
Homepage Homepage
Section Biomedicine
Title of Thesis Project Cancer Bioinformatics: From tumor suppressors to platelet-mediated metastasis
Primary Supervisor Prof. Dr. Thomas Dandekar
Member of Thesis Committee Prof. Dr. Harald Schulze
Prof. Dr. Oliver Borst, DHZ Tübingen
Conference Contribution
Publication Personal Formatting

Signaling network analysis reveals fostamatinib as a potential drug to control platelet hyperactivation during SARS-CoV-2 infection. Osmanoglu Ö, Gupta SK, Almasi A, Yagci S, Srivastava M, Araujo GHM, Nagy Z, Balkenhol J, Dandekar T. Front Immunol. 2023 Dec 21;14:1285345. doi: 10.3389/fimmu.2023.1285345. eCollection 2023.

Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information. Gupta SK, Osmanoglu Ö, Minocha R, Bandi SR, Bencurova E, Srivastava M, Dandekar T. Front Med (Lausanne). 2022 Nov 3;9:1008527. doi: 10.3389/fmed.2022.1008527. eCollection 2022. 

A modular systems biological modelling framework studies cyclic nucleotide signaling in platelets. Breitenbach T, Englert N, Osmanoglu Ö, Rukoyatkina N, Wangorsch G, Heinze K, Friebe A, Butt E, Feil R, Dittrich M, Gambaryan S, Dandekar T. J Theor Biol. 2022 Oct 7;550:111222. doi: 10.1016/j.jtbi.2022.111222. Epub 2022 Jul 16.

Topological Analysis of the Carbon-Concentrating CETCH Cycle and a Photorespiratory Bypass Reveals Boosted CO2-Sequestration by Plants. Osmanoglu Ö, Khaled AlSeiari M, AlKhoori HA, Shams S, Bencurova E, Dandekar T, Naseem M. Front Bioeng Biotechnol. 2021 Nov 1;9:708417. doi: 10.3389/fbioe.2021.708417. eCollection 2021.

 

Aspergillus fumigatus versus Genus Aspergillus: Conservation, Adaptive Evolution and Specific Virulence Genes. Gupta SK, Srivastava M, Osmanoglu Ö, Xu Z, Brakhage AA, Dandekar T. Microorganisms. 2021 Sep 23;9(10):2014. doi: 10.3390/microorganisms9102014.

Modeling Immune Dynamics in Plants Using JIMENA-Package. Osmanoglu Ö, Shams S, Dandekar T, Naseem M. Methods Mol Biol. 2021;2328:183-189. doi: 10.1007/978-1-0716-1534-8_11.

 

Integrated Framework of the Immune-Defense Transcriptional Signatures in the Arabidopsis Shoot Apical Meristem. Naseem M, Osmanoğlu Ö, Kaltdorf M, Alblooshi AAMA, Iqbal J, Howari FM, Srivastava M, Dandekar T. Int J Mol Sci. 2020 Aug 11;21(16):E5745. doi: 10.3390/ijms21165745.

 

Bacterial Shoot Apical Meristem Inoculation Assay. Naseem M, Gun G, Osmanoglu O, AlRemeithi FA, Iqbal J, Dandekar T. Methods Mol Biol. 2020;2094:17-22. doi: 10.1007/978-1-0716-0183-9_2.

Molecular Modeling of the Interaction Between Stem Cell Peptide and Immune Receptor in Plants. Naseem M, Srivastava M, Osmanoglu O, Iqbal J, Howari FM, AlRemeithi FA, Dandekar T. Methods Mol Biol. 2020;2094:67-77. doi: 10.1007/978-1-0716-0183-9_8.

Mapping a Transcriptome-Guided Arabidopsis SAM Interactome. Naseem M, Osmanoglu O, Iqbal J, Howari FM, AlRemeithi FA, Kaltdorf M, Dandekar T. Methods Mol Biol. 2020;2094:113-118. doi: 10.1007/978-1-0716-0183-9_12.

Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs. Gupta SK, Srivastava M, Osmanoglu Ö, Dandekar T. Sci Rep. 2020 Feb 11;10(1):2334. doi: 10.1038/s41598-020-59344-1.

Synthetic Rewiring of Plant CO2 Sequestration Galvanizes Plant Biomass Production. Naseem M, Osmanoglu Ö, Dandekar T. Trends Biotechnol. 2020 Apr;38(4):354-359. doi: 10.1016/j.tibtech.2019.12.019. Epub 2020 Jan 17.
Last update Publications 13.01.2024